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NIST Physics Laboratory "Technical Activities 2000"

Optical Technology Division

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Technical Highlights
  • Rotational Dynamics of Individual Dye Molecules. We have used confocal fluorescence microscopy and polarization modulation to study the rotational dynamics of single dye molecules embedded in thin polymer films and on glass surfaces. The extension of fluorescence microscopy and spectroscopy to the single molecule (SM) regime in recent years has allowed access to a wide range of phenomena that are obscured in ensemble measurements, with the potential to impact many areas in biology, physics, and chemistry. We have improved upon existing techniques to study the rotational motion of single fluorescent molecules, and we have introduced a new technique for quickly ascertaining if a particular molecule is rotationally mobile.

    In figure 1(a), we show a map of individual dye molecules in a thin polymer film. The image is formed by scanning a focused laser beam over the sample and collecting the fluorescence from the dye molecules in the sample using a high numerical aperture lens and a photon-counting avalanche photodiode. The fluorescent molecules have stripes through them because the polarization of the light is modulated as the laser beam scans the surface (the laser scans quickly in the vertical direction in this image and slowly from left to right). The phase of the stripes on each molecule gives the orientation of the molecule. Molecules that rotate during the course of a scan show phase-shifts in the stripes. For example, the molecule shown in 1(b) is stationary, whereas the molecules shown in 1(c) through 1(g) have increasing amounts of rotational motion. We use related polarization modulation techniques to study the rotational dynamics of single molecules over 32 seconds with a resolution of 32 ms. We find increasing rotational activity as the thickness of the polymer film is decreased, and a distribution of rotational jump times that suggests either disorder or very slow dynamics in the polymer matrix. Current work is ongoing to understand and model these dynamics and we expect to be able to eventually use these measurements as a local probe (with a range of a few nanometers) of the polymer matrix. (L.S. Goldner and K.D. Weston)

  figure 1

Figure 1. Dye molecules in a thin polymer film. The different fringe patterns reveal molecular rotational dynamics, as explained in the text.

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